Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  237 bits (604), Expect = 1e-66
 Identities = 163/548 (29%), Positives = 276/548 (50%), Gaps = 33/548 (6%)

Query: 103 FDSNGKVIENDPNWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVA 162
           FD NG+  + DPN      Y    R W+QEA   + +F+ +P +D    +   ++ +PV 
Sbjct: 129 FDLNGR-FDGDPN------YYTNKRPWWQEAIDQRGLFVGDPAVDANDGSISATVKTPVY 181

Query: 163 DTMNNFIGAMYFDVDLSRIQKNV-DDINLFEAGYVFITSNTGKVIIH----------SNT 211
                 IG    D+ +  I K +   I     G  F+ ++ GK++            S  
Sbjct: 182 GANGELIGIGGMDILIDTIGKTLLAPIKYRNYGQAFLMTDEGKLVYFPGFSDKFPPGSLA 241

Query: 212 DELGKNVKDIYNGF--------RLDKGKVVLSVNGVNKWLYTSPILGGD-----WFIIAV 258
           +++    KD  +GF        R  +G   ++ NGV + + T   +GGD     W +  +
Sbjct: 242 NQIDSQFKDT-SGFTALRQQMQREAQGFAEVTFNGVPQRV-TFVSVGGDYPKQKWHLAFM 299

Query: 259 IDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDL 318
           +   +    + +  +   F +   ++  G+ +  +L      L  L  A++DIA G  DL
Sbjct: 300 LPHEVIEAPVTEAFWNACFVALGIMLLVGITVWLMLLPFRRQLSKLLDAMEDIAEGDSDL 359

Query: 319 TKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQ 378
           ++++    + E  +L   FN F E +   +   + +   V  G        +++   V  
Sbjct: 360 SQRILMEREDELGKLGDAFNRFAEKVQQMLLHTRNLTQEVGTGVMDARQVCDLAVSSVSS 419

Query: 379 QLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIR 438
           Q Q+++ +ATA  +MA T+ E+A SAQ A D A++ ++ + +G+ +V   T+ ++ LS++
Sbjct: 420 QKQQIDSVATAATQMAQTSQEMAISAQRANDFAEKAQTQAHDGTQIVSRATEGMKALSVQ 479

Query: 439 IGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEV 498
           +  + + +KEL  ++++I  VL VI +IADQTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 480 VIEAAKVIKELRSSSEQIGEVLSVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEV 539

Query: 499 RTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAI 558
           RTLA RTQ ST  I  II+ LQ+ A    + M+    +  +  + T QV + +S +  AI
Sbjct: 540 RTLASRTQDSTANIQGIIQTLQQSALQAEQVMESGVEQARVGQDLTTQVEQALSDIASAI 599

Query: 559 HRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGTEMNAQVSKVKEQN 618
             I    ++I  A  +Q++VAEE+  N V+++ LS +   ++ +    +        E  
Sbjct: 600 VSIQQQTVEITVAIGQQAVVAEEVAQNVVSVRGLSDQSLLSSQDLSQSLQGFEQATHELT 659

Query: 619 ELLNEFKI 626
             + +FKI
Sbjct: 660 RNIGQFKI 667