Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  274 bits (700), Expect = 1e-77
 Identities = 196/630 (31%), Positives = 315/630 (50%), Gaps = 18/630 (2%)

Query: 8   KLIFISSFILLVTVAFVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLESDISLAS 67
           +L+F S F +L+TVA +V       +       +  I+++ N     + L ++      +
Sbjct: 8   RLLFSSLFAVLITVAVLVSISSYFIRNNALENTQHEIDQLANTFAEGIGLWMQDRKMAIT 67

Query: 68  SIVDSISLRISDE--QYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPEDDYDPR 125
           S+  +I    S +   Y+    NG      F  T FG D  G +   DP     + YDPR
Sbjct: 68  SLKKTIEADPSVQITPYLLQAHNG----MGFALTYFG-DEQGNMYRQDPALNVAN-YDPR 121

Query: 126 SRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYFDVDLSRIQKNV 185
            R WY +AK    I +T PY+    K  +V+I+ PV     +  G    ++ + ++   V
Sbjct: 122 IRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVT-VSGSLFGVAAANLTIDQLTDAV 180

Query: 186 DDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIYNGF-------RLDKGKVV-LSVN 237
             + +   GY  +   TG +I H  +    + +  I N F       R +   +    ++
Sbjct: 181 QRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANANTLEERELD 240

Query: 238 GVNKWLYTSPILGGDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILRRL 297
           G  + +Y + +   DW ++ V+++   M     + + +    A  LV  GL+LV I +  
Sbjct: 241 GETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQ 300

Query: 298 MSPLKTLDSAIKDIASGGGDLTKKLDT-NLDKEFSELALGFNSFTEMLGSQIRQLKTIAS 356
              L+ +  A+ DIA G GDLT ++ T N   E   LA GFN F E L   I ++  IA 
Sbjct: 301 FKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAG 360

Query: 357 GVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGES 416
            +   A+ ++  A  +   +  Q  E+  +ATA+ EMA    E+A++A+  A  A++   
Sbjct: 361 QLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAVG 420

Query: 417 ASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALN 476
            S  G   V ++  +I+ L+  + ++   + EL + + +I ++L  I+ IA+QTNLLALN
Sbjct: 421 LSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALN 480

Query: 477 AAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLE 536
           AAIEAARAGE GRGFAVVADEVR L+QRT  ST +I  +IE LQ+ A    +SM +S   
Sbjct: 481 AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDM 540

Query: 537 TDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKL 596
            +  V   N  +E +  + +AI+ ISDM  QIA+AAEEQ+ V  EIN NT +I+++S  L
Sbjct: 541 AETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENL 600

Query: 597 SEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
           S  A ++  +            + +  FK+
Sbjct: 601 SIEAQSSMVQAQELAHLAASLQQEVGRFKL 630