Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., Aerotaxis receptor Aer from Pseudomonas fluorescens FW300-N2E2

 Score =  359 bits (922), Expect = e-103
 Identities = 211/527 (40%), Positives = 307/527 (58%), Gaps = 15/527 (2%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT       +   ++STT     ITY N  F+ ISG+++EELI  PHN+VRHPD
Sbjct: 1   MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVDISGYSKEELIRSPHNLVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           +P A FAHMW TLK G  WMG+VKNR KNGDHYWV+A+  P+ +  +VV Y+SVR KP  
Sbjct: 61  VPSAVFAHMWGTLKQGLPWMGIVKNRSKNGDHYWVNAYVTPVFEGNQVVGYESVRVKPSA 120

Query: 125 SHVQAAEKAYAQLRNGKNILPK----IRLGFHWKLILLVWGSLFASIAIVSLIYPSALMS 180
             +  AE  Y ++  GK+ +P     + +   W   +LV    F   A +   +  AL +
Sbjct: 121 EQIARAEALYQRINQGKSAVPGSDKWVPMLQDWLPFILVSQLSFVVGAFLDSSWGFALAA 180

Query: 181 ILFLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMA 240
           +L + L +     +G+ +    +KRL++   + + +PL   +YT       +LE ++   
Sbjct: 181 VLSVPLGL-----MGLQWQQRGIKRLLRLAEQTTSDPLIARMYTDSRGVQARLEMSILSQ 235

Query: 241 QAETSAVIGRIGDASNQLNKFA---NDLLHNIEKSNILTSEQQAETEQVATAINEMAASI 297
           +A     + R+ D +  LN  A   N L HN   S+     Q+ ETEQVATA+N+MAA+ 
Sbjct: 236 EARLKTCLTRLQDTAEHLNDQARQSNTLAHN---SSSGLERQRVETEQVATAVNQMAATT 292

Query: 298 QEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDIS 357
           QEVA+  +  A++++ AN  T  G+ I  +  ++I  L   V +  Q + +L + S++I 
Sbjct: 293 QEVASHVQRTADATQEANRLTSRGRDIAGETREAIERLSVVVGETGQTVTQLAKDSDEIG 352

Query: 358 KVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMID 417
            V++VI+ IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT +ST  I  +I 
Sbjct: 353 GVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQIHALIA 412

Query: 418 TLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSA 477
            LQ  A  AV  M+   +QA   V +  +A +AL GI + V+ IT M+ Q+A A ++QS+
Sbjct: 413 KLQQTATNAVQTMDAGHRQAEEGVARVMEADEALVGISEAVAHITDMTTQIAAATEEQSS 472

Query: 478 VSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
           V++EI+ +ISNI   AD        +A  +E +   ++    L ++F
Sbjct: 473 VAEEISRNISNISELADQTSGQAHSSALLSEELTRTANTQYSLVERF 519