Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  365 bits (938), Expect = e-105
 Identities = 214/524 (40%), Positives = 310/524 (59%), Gaps = 8/524 (1%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT           ++STT     ITY N  F+++SGF  +ELI  PHN+VRHPD
Sbjct: 1   MRNNQPVTQREYAFPDQQRLVSTTDLKGQITYCNNIFVEVSGFDRDELIRAPHNLVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPII-KNGKVVEYQSVRTKPE 123
           +PPA F HMW+TLK G+ WMG+VKNR K GDHYWV+A+  PI+ +  +V  Y+SVRTKP 
Sbjct: 61  VPPAVFDHMWTTLKQGKPWMGIVKNRRKTGDHYWVNAYVTPILDQQRQVTGYESVRTKPT 120

Query: 124 PSHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSLI---YPSALMS 180
              VQ AE  Y ++ +GK+ +P+      W  +L  W        +  L+   +  AL  
Sbjct: 121 REQVQRAEALYERINSGKSGVPQ---SDRWLPVLSKWLPFLIISQLGFLVGAGFDHALGF 177

Query: 181 ILFLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMA 240
           I    L V  +   G+ +    +KRL+Q   + + +PL   +YT       QLE A+   
Sbjct: 178 IAAAALAV-PLGLAGLQWQQRGLKRLLQLASQTTSDPLIARMYTDSRGVEAQLEMAMLSQ 236

Query: 241 QAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEV 300
           QA     + R+ D + QL   A       +      ++Q  ETEQVATAINEMAA+ QEV
Sbjct: 237 QAHLKTCLTRLQDTAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINEMAATTQEV 296

Query: 301 ATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVL 360
           A+    AA ++  A+  TI G+++ ++  ++I +L   V+   + +++L   S+ I  V+
Sbjct: 297 ASNVALAAEATREASRLTIHGREVTAETRKAIQQLADSVASTGEAVNQLANDSDAIGGVV 356

Query: 361 EVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQ 420
           +VI+SIADQTNLLALNAAIEAARAG+SGRGFAVVADEVR LA RT ++T +I ++I+ LQ
Sbjct: 357 DVIKSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEIHQLIEKLQ 416

Query: 421 GRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSD 480
            +A+ AV   E    QA   V+Q  QA  ALTGI + + +I  M+ Q+A+A ++QSAV+D
Sbjct: 417 LQARHAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASATEEQSAVAD 476

Query: 481 EINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
           EI++++S I   AD    + + +A  +E +A  +     L ++F
Sbjct: 477 EISNNVSTIARLADQTSGDARSSALLSEDLAATAEGQYALVERF 520