Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  539 bits (1389), Expect = e-158
 Identities = 281/527 (53%), Positives = 381/527 (72%), Gaps = 2/527 (0%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR NLPVTG ++  S + NILSTT  +  ITYVNPDF+KISGF E ELIGQ HN+VRHPD
Sbjct: 1   MRMNLPVTGRDVSFSETANILSTTDLNGDITYVNPDFIKISGFEESELIGQHHNIVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MP  AFA +W +++ GRSWMG+VKNRCKNGDHYWVSAF  PI +NG+V+EYQSVRTKP+P
Sbjct: 61  MPTEAFADLWGSVRGGRSWMGMVKNRCKNGDHYWVSAFVTPISRNGRVMEYQSVRTKPQP 120

Query: 125 SHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSL-IYPSALMSILF 183
           + + AAE+ YAQLR+ +  +   R     +  + ++ +L A+  +V+  +   A ++I  
Sbjct: 121 AQIAAAERLYAQLRDKRTPVALRRKPLSARSRVALFAALGAAPCVVAGGLLGGAGVAIAL 180

Query: 184 LTLLVGSITTLGITYL-LVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQA 242
            T    ++   G+ YL L P+++L +   +  DNP+ Q++Y GR DE+GQ+ FA++M + 
Sbjct: 181 ATAAAAALGAGGLAYLALAPLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLET 240

Query: 243 ETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVAT 302
           E  A++GRIGDAS QL++ A++LL  ++ S    S QQ+ET+QVATAIN+MAAS+QEVA 
Sbjct: 241 EAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVAN 300

Query: 303 GAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEV 362
            A+  A ++  A+ ET +G ++V++   +I +L  ++ QA  VIHELE HSNDI+KVL+V
Sbjct: 301 NAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDV 360

Query: 363 IRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGR 422
           IR IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RTQQST +I  MI  LQG 
Sbjct: 361 IRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGG 420

Query: 423 AKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEI 482
           A+ AV VM+ S +QA+ SVE A QAA +L GI  RV++I+ MS Q+A AV+QQSAVS+ I
Sbjct: 421 ARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENI 480

Query: 483 NHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQFWERNK 529
           N +I +IR  +D +V NG  + + A GVA L++++  L QQFW R +
Sbjct: 481 NQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQFWTRRR 527