Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  339 bits (869), Expect = 2e-97
 Identities = 199/524 (37%), Positives = 302/524 (57%), Gaps = 9/524 (1%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N+P+T       +S  ++STT  +SHITY N  F+ +SGF  EEL+GQPHN+VRHPD
Sbjct: 1   MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVTLSGFTREELVGQPHNLVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MP + FAHMW T+K G+ WMG+VKNR K GD+YWVSA+   + +NG++V Y+SVR+ P  
Sbjct: 61  MPASVFAHMWETIKQGKPWMGVVKNRSKQGDYYWVSAYVTAVYENGRIVGYESVRSLPTR 120

Query: 125 SHVQAAEKAYAQLRNGKN-ILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSILF 183
             V+ AE  YA+LR GK  +       +H  LI  +   L A    V +     L SI+ 
Sbjct: 121 DQVRRAEALYARLRAGKAAVSASSSAAYH--LIRQLPMILCALALAVGVYLLDDLPSIIM 178

Query: 184 LTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQAE 243
           + +++  +           +++ ++ + K   + L  + Y+       QL+ A+   +A 
Sbjct: 179 IPIVMVVLGVFLEVRQRSSIRKTLEEHPKAFTSALIALTYSDSRGPQAQLDLAMLSEEAR 238

Query: 244 TSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVATG 303
               + R+ D    + + A        +      +Q++E +Q ATAIN+MAA+IQEV   
Sbjct: 239 LQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQEVTHN 298

Query: 304 AKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEVI 363
            ++ A+++E A+     G+ +  ++  +I  +   V+     + EL + +  I  V++VI
Sbjct: 299 VQNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDIGNAVGELADATQSIGSVVDVI 358

Query: 364 RSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGRA 423
            SIA QTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RTQ ST  IQ++I +L+  A
Sbjct: 359 TSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQIITSLRDGA 418

Query: 424 KLAVAVM---EHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSD 480
             AV      E  SQ+++ SVE  Q+A D   GI + V+ ITGMS QMA+A ++QS V++
Sbjct: 419 DRAVKTASKGEQISQESVASVEAVQKALD---GISQSVTRITGMSQQMASASEEQSHVAE 475

Query: 481 EINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
            I+  I+ I    D +    +  ++ +  +  ++  L  LA++F
Sbjct: 476 TISQQITRIAQLCDESASQAQQGSQISSELEEMAQYLHSLAERF 519