Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  367 bits (942), Expect = e-106
 Identities = 209/522 (40%), Positives = 306/522 (58%), Gaps = 5/522 (0%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N P+T H     +   ++STT     ITY N  F+ ISG++E EL+G  HN VRHPD
Sbjct: 1   MRNNQPITQHERTFPAEQRLISTTDTRGTITYCNDAFVDISGYSEAELLGAAHNTVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           +PPA F HMW+TLKSG+ WMG+VKNRCKNGDHYWV+A+  P+++N +VV ++SVR KP  
Sbjct: 61  VPPAVFEHMWTTLKSGQPWMGIVKNRCKNGDHYWVNAYVTPVLENRQVVGFESVRIKPTA 120

Query: 125 SHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGS--LFASIAIVSLIYPSALMSIL 182
             V+ AE  Y +L  GK+ +P       W  +L  W    L + ++ +  ++ ++     
Sbjct: 121 EQVRRAEALYTRLNKGKSAVPGRD---KWLPVLQDWLPFILVSQLSFLIGVWLNSHWGFA 177

Query: 183 FLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQA 242
               L   +  LG+++     KRL++   + + +PL   +YT       +LE ++   +A
Sbjct: 178 LAAALSVPLGLLGLSWQQRGTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSILSQEA 237

Query: 243 ETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVAT 302
                + R+ D +  LN  A         S+I    Q+ ETEQVA AIN+MAA+ QEVA+
Sbjct: 238 RMKTCLTRLQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMAATTQEVAS 297

Query: 303 GAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEV 362
               AA++++ AN  T  G+ I  +  ++I  L   V +    +  L + S++I  V++V
Sbjct: 298 HVNRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAKDSDEIGGVVDV 357

Query: 363 IRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGR 422
           I+ IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT +ST  I  +I  LQ  
Sbjct: 358 IKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQT 417

Query: 423 AKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEI 482
           A  AV  M+   +QA   V +  +A  AL GI + V++IT M+ Q+ATA ++QSAV++EI
Sbjct: 418 ATDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATATEEQSAVAEEI 477

Query: 483 NHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
           N +I+ I   AD   D  + +A  +  +   +++   L ++F
Sbjct: 478 NRNIATIASLADQTSDEARRSAVLSGELTDTANSQYSLVERF 519