Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  214 bits (545), Expect = 8e-60
 Identities = 128/348 (36%), Positives = 206/348 (59%), Gaps = 1/348 (0%)

Query: 178 LMSILFLTLLVGSITTLGITYLLV-PMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFA 236
           L+++  + LL+G    + IT  +  P+   + +  + +D  L+  L T R DE G L+  
Sbjct: 293 LLTVAVIVLLLGIFAAILITRQITRPLDSTVIAARRIADGDLTNDLSTTRQDELGLLQNT 352

Query: 237 LRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAAS 296
           ++        +IG I +   Q+   A +L    E+++   ++Q+ E +QVATA+N+MA++
Sbjct: 353 MQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQMAST 412

Query: 297 IQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDI 356
           +QEVA   + A+ ++  A+     G  +V  A++ I++L  EV Q  + +  L + S+ I
Sbjct: 413 VQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEAMQRLIQDSDKI 472

Query: 357 SKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMI 416
             V++VI+++A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST +I+ +I
Sbjct: 473 GGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIEALI 532

Query: 417 DTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQS 476
            +LQ     A  +M  S Q+   +V  A+QA ++L  I   +  I  MS Q++ A ++QS
Sbjct: 533 KSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAAEEQS 592

Query: 477 AVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
           AV+DEIN S+ ++R  AD +    + +A     +A L  NL ++  +F
Sbjct: 593 AVTDEINRSVISVRDIADQSATATEQSAASTVELARLGSNLQDMVARF 640



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 17/70 (24%), Positives = 35/70 (50%)

Query: 458 VSDITGMSVQMATAVDQQSAVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNL 517
           +  I+    Q+ATA ++ SAVS++ +  ++  ++  D         A   + VA  + + 
Sbjct: 364 IGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQMASTVQEVAQNTEDA 423

Query: 518 SELAQQFWER 527
           S+ A+Q  +R
Sbjct: 424 SQAARQASDR 433