Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  213 bits (543), Expect = 1e-59
 Identities = 129/349 (36%), Positives = 208/349 (59%), Gaps = 2/349 (0%)

Query: 178 LMSI-LFLTLLVGSITTLGITYLLV-PMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEF 235
           L+S+ L   L++ ++    IT L+V P++  ++   + +D  L+      R DE GQL+ 
Sbjct: 269 LLSVWLIAALIMSALAAWVITNLIVGPLRDTLKLAERVADGDLTHNQVVTRKDELGQLQG 328

Query: 236 ALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAA 295
           ++         +IG + D   Q+   A  L    E+++   + Q+ ET+QVATA++EM+A
Sbjct: 329 SMMRMTGNLRELIGGLRDGVTQIASAAEQLSAVTEQTSAGVNSQKNETDQVATAMHEMSA 388

Query: 296 SIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSND 355
           ++QEVA  A+ A++++ +A+ E   G  +VS+A   I +L  EV+ +K  + +L+  SN 
Sbjct: 389 TVQEVARNAEQASHAAVNASKEAREGDGVVSKAVAQIEKLATEVTHSKSAMDDLKNESNK 448

Query: 356 ISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRM 415
           I  VL+VI+++A+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RTQ ST +I  +
Sbjct: 449 IGGVLDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQTSTEEIAAL 508

Query: 416 IDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQ 475
           I  L  R      ++++S      SVE  + A  ++  + + +S I  M+ Q+A A ++Q
Sbjct: 509 ISGLHTRTAQVATILDNSQALTANSVELTRNAGVSINNMTQAISTIETMNHQIAAAAEEQ 568

Query: 476 SAVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
           SAV++EIN S+ N+R  ++      +  A  +  +A L  +L  L  +F
Sbjct: 569 SAVAEEINRSVLNVRDISEQTASASEETAASSVELARLGVHLQSLVSRF 617