Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  217 bits (553), Expect = 9e-61
 Identities = 130/348 (37%), Positives = 211/348 (60%), Gaps = 1/348 (0%)

Query: 178 LMSILFLTLLVGSITTLGIT-YLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFA 236
           L S+  L LL+G +    +T  + VP+++ + +  + +   LS+ +   R DE GQL+ +
Sbjct: 297 LSSVAGLALLIGLLAAWIMTRQITVPLQQTLSAAARIAQGDLSRDISVTRRDEMGQLQGS 356

Query: 237 LRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAAS 296
           ++        ++G I +  +Q+   A  L    +++ I  + Q+ ET+QVATA+NEMAA+
Sbjct: 357 MQTMTVSLRELVGGISEGVSQIASAAEQLSAVTKQTCIGVTSQKDETDQVATAMNEMAAT 416

Query: 297 IQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDI 356
           +QEVA  A+ A+ ++  A+ +  SG ++V QA   I +L  EV  + Q +  L++ SN I
Sbjct: 417 VQEVARNAQEASQAAAQADQQARSGDEVVGQAITQIEQLAREVLNSTQSMSALKQESNKI 476

Query: 357 SKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMI 416
             VL+VI+S++ QTNLLALNAAIEAARAGE+GRGFAVVADEVRGLA RTQ+ST +I+ +I
Sbjct: 477 VGVLDVIKSVSQQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEELI 536

Query: 417 DTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQS 476
             LQ   +     ++ S      +VE +++A  AL  I + V+ I  M+ Q+ATA ++QS
Sbjct: 537 AALQTGTQQVATTLDSSRTLTDNTVELSRRAGGALEQITRTVATIQHMNEQIATASEEQS 596

Query: 477 AVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
            V+++IN ++ ++R  ++      +  A  +  +A L  +L  L  +F
Sbjct: 597 VVAEQINRNVISVRDISEQTAAASEQTAASSVELARLGTHLQTLVGKF 644



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 14/178 (7%)

Query: 217 PLSQVLYTGRSDEFGQLEFALRMAQAETSAVIGRIG---DASNQLNKFANDLLHNIEKSN 273
           P S  L T + +E  + +  L   Q++  A I  +    +  N++ K   D+  N +  N
Sbjct: 76  PESTALVTEKLNEM-KAQLTLLHKQSDEEATIKLLNGQFETLNRIEKTFADVRDNRQTRN 134

Query: 274 ILTSEQQAETEQVATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSIT 333
            + +  +  +EQ   AI ++     EV        +SSE     T      +SQ  Q + 
Sbjct: 135 QIRTRLEQTSEQALQAIAQVEV---EVLKSVSQEQDSSERMEEFT-----NISQLRQQVQ 186

Query: 334 ELEHEVSQAKQVIHELEEHS--NDISKVLEVIRSIADQTNLLALNAAIEAARAGESGR 389
              ++V        + +E +    I + L+ I  IA      +L     A  A +S R
Sbjct: 187 TARYQVQTYTFTTRDADESAAIAAIDEALKEIGQIAQDQGNESLQGLTPATAALQSYR 244