Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  292 bits (748), Expect = 2e-83
 Identities = 188/525 (35%), Positives = 275/525 (52%), Gaps = 14/525 (2%)

Query: 3   SIMRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRH 62
           S M K+ P+    I L+    ++STT     ITY NP F++ISG++++EL+G  HN+VRH
Sbjct: 2   SNMSKHRPINQREIRLNQDDELISTTDLRGVITYANPRFIQISGYSKQELVGHSHNIVRH 61

Query: 63  PDMPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKP 122
           PDMP  AFA +WS LK+G+SW GLVKNR K+G  YWV AF  PI + GK+V YQSVR  P
Sbjct: 62  PDMPADAFAELWSKLKAGQSWRGLVKNRAKDGSFYWVDAFVTPIFEAGKIVGYQSVRRMP 121

Query: 123 EPSHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL 182
           +   V  A + Y +L+ GK +   + LG    +  LV       + I  L++   +M  +
Sbjct: 122 QTEWVNRATRIYQRLQQGKGLPRHLSLGQKRIISALV---ATTGLGICGLLWGPGVM--V 176

Query: 183 FLTLLVGSITTLGITY---LLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRM 239
              LL+G    L I Y     +P + +      DS   +S+ +Y G  D    L+F L +
Sbjct: 177 AGALLMG--VNLAIFYDEAFRIPARLMALQQEFDS---VSRHVYCG-YDTSSILDFQLLL 230

Query: 240 AQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQE 299
            QA    V+GR  D + QL + A +L+    ++      Q  + EQ+A A+ EM A+I E
Sbjct: 231 QQARMQGVLGRSQDQALQLQRIAENLVVASGQTEASLDMQHRQLEQLACAMEEMTATIGE 290

Query: 300 VATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKV 359
           VA  ++  +     A          +S+    I  L   V++A     +L   +  ++  
Sbjct: 291 VALNSRQTSEKIRDAQQLCQHNAHAMSEKRVRIANLADAVAEAASNAEKLNREAEKVASA 350

Query: 360 LEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTL 419
           +  I +IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR L++RTQQSTM I R ++ +
Sbjct: 351 MSEIDAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQQSTMSISRSVEQM 410

Query: 420 QGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVS 479
                     M  S Q+A        ++ D +  I  ++S+I   + Q A A  QQ  V 
Sbjct: 411 FSMLGSWAEEMGRSQQEAEACARAIAESVDDIQNIHVQISEIHDFAEQNAVASAQQETVV 470

Query: 480 DEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
            ++N ++  I   A+ N+    +  K    +   +   S L Q F
Sbjct: 471 ADMNQNLQQIAHGANDNLAAMSLVGKATLELQSSADKASSLRQTF 515