Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  366 bits (939), Expect = e-105
 Identities = 214/529 (40%), Positives = 306/529 (57%), Gaps = 16/529 (3%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT   +EL +   ILSTT     I YVN DF  I+GF EEEL+ +PHN++RHPD
Sbjct: 1   MRNNQPVTLREVELDNEAIILSTTDLKGRIKYVNQDFCNIAGFREEELVHEPHNLIRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MPPAAF  +WS ++ GR WMGLVKNRCKNGD+YWV A+  P+ ++G+V EYQSVR K   
Sbjct: 61  MPPAAFKMLWSRIREGRPWMGLVKNRCKNGDYYWVDAYVTPVYEDGEVHEYQSVRRKVNA 120

Query: 125 SHVQAAEKAYAQLRNGKN--ILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL 182
            H + AE  YA+L       IL   R G   KL+L  W +L   ++ V+  +       L
Sbjct: 121 KHRERAESLYAELVKDPQPAILRDSRFGVCGKLML--WMALMLGVSAVAAQWS------L 172

Query: 183 FLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQA 242
           +L LL+  I  LG   LL P++ L         +P+++ +YTGR DE G L  A+R    
Sbjct: 173 WLVLLLLPIALLGCRSLLAPLRELASEARSIIQDPVARAVYTGRRDEIGDLMLAMRFMTN 232

Query: 243 ETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVAT 302
           ET  V+GR+ D++  +   +NDLL  I +S      Q+ +T+Q A A+ E+  S  EV  
Sbjct: 233 ETGGVMGRMADSTETMANQSNDLLDAIARSAERADGQRQQTQQAAAAVEELHVSFAEVKE 292

Query: 303 GAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEV 362
                 +  E        GQQ +++   ++ +L+H++S    V+ E+   S  I++VLEV
Sbjct: 293 HTLAVVSDVEQCQSAMGLGQQQLAEVELAMQQLQHQMSLCDAVVREIASDSQAINQVLEV 352

Query: 363 IRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGR 422
           I +IA+QTNLLALNAAIEAARAGESGRGFAVVADEVR L+ RT +ST  I+ ++   Q  
Sbjct: 353 IGTIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSGRTGESTGQIEGIVRKFQSS 412

Query: 423 AKLAVAVMEHSSQQ---ALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVS 479
              A A +++S QQ       + Q QQA  AL G    ++ I  +S   A A+ +QS+ +
Sbjct: 413 TARAEANLDNSQQQLKTLAARLGQVQQAFGALEG---AINTIKSLSDHSAHAMTEQSSAA 469

Query: 480 DEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQFWERN 528
             I+ S+  I   A+  ++  +   +    ++ LS   S L++QFW+++
Sbjct: 470 GSISDSLQTINELAEAVLNQSREAEQLGARMSRLSSKTSGLSKQFWQKS 518