Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  340 bits (871), Expect = 1e-97
 Identities = 197/526 (37%), Positives = 294/526 (55%), Gaps = 12/526 (2%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PV  + + L+    +LSTT    +I Y N DF +I GF+EEEL+ QPHN+VRHPD
Sbjct: 1   MRNNQPVIDNEVVLTDDDILLSTTDLKGNIGYANEDFCRICGFSEEELVRQPHNIVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MP AAFA +W  L   +SW+G+VKNRCK+G +YWV+A+  P+++NG+V EYQSVR +   
Sbjct: 61  MPKAAFAILWQRLAQKQSWLGVVKNRCKDGSYYWVNAYVAPVMENGQVKEYQSVRRRASQ 120

Query: 125 SHVQAAEKAYAQLRNG--KNILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL 182
           + V+ A   Y  L     ++ +   +LG+  KL L          A++ L+    L +I 
Sbjct: 121 AQVERASDIYQSLNKSEQRSEIKDAKLGYGGKLTLF---------AVLCLLLAIGLSNIS 171

Query: 183 -FLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQ 241
            +L L+   +  +G+  LL P++ L         +P+++ +Y GR DE G ++FA+    
Sbjct: 172 PWLALICAPLLAIGMRLLLAPLRALNDQALTIVSDPVARHIYAGRRDELGNIQFAMEFTT 231

Query: 242 AETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVA 301
           AE + V+GR+ DAS+ + + ++ LL +I  +      Q  +T Q A A+ E+ AS  E+ 
Sbjct: 232 AEIAGVVGRMTDASSVIARDSDALLGSITATADRADGQNQQTAQAAAAVEELTASFNELG 291

Query: 302 TGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLE 361
              K  +   E++    + G + +     SI EL +EV    QV+ E+E  S  I++VLE
Sbjct: 292 QQLKQVSADVEASQAAVLQGYEQLDAVVASIDELHNEVGNFAQVVSEIEHDSVAINQVLE 351

Query: 362 VIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQG 421
           VI  IA+QTNLLALNAAIEAARAGESGRGFAVVADEVR L+ART  ST  I  +I   Q 
Sbjct: 352 VITKIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSARTADSTSQIDAIIAKFQQ 411

Query: 422 RAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDE 481
               A   +    +QA  +V+  +QA      +  R+  I  M+   A A+ +Q   + +
Sbjct: 412 STANAANTLTAGQRQATQAVQLVKQAEAVFAELVTRIDKINQMTELSADAMQEQGLAAVD 471

Query: 482 INHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQFWER 527
           I+ S+  I   A       + + +  E  +  S    +LA+QFW +
Sbjct: 472 ISDSLQAISELASEGFAQSQADRQLGERSSLKSMESRQLARQFWRQ 517