Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  367 bits (941), Expect = e-106
 Identities = 210/526 (39%), Positives = 298/526 (56%), Gaps = 9/526 (1%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           M+ N PVT      ++ T +LSTT     I Y N  F ++S F ++EL  QPHN+VRHPD
Sbjct: 1   MKNNQPVTQKEKVFAADTILLSTTDLKGKIKYANAGFTQVSEFTQDELYRQPHNIVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MPPAAF  MWS LK G+ W+G+VKNR K+GDHYWV+A+  P+ + G+V EYQSVR K   
Sbjct: 61  MPPAAFESMWSRLKQGKPWIGIVKNRAKSGDHYWVNAYVAPVFEGGQVHEYQSVRRKATQ 120

Query: 125 SHVQAAEKAYAQLRNGKN--ILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL 182
           + +  A+  Y +L  GK    L   RLGF  +L L++  SL   +A+          S L
Sbjct: 121 AQIDNAQALYGELNAGKRPRALKAARLGFGKRLGLVLLLSLGVGVALAGY-------SPL 173

Query: 183 FLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQA 242
              LL   +   G++ +L P   L++      D+PL+  +Y GR DE G+L FAL+    
Sbjct: 174 LALLLATGLGLGGLSLILKPFNALVEQASGIIDDPLATAVYCGRQDELGKLSFALQYLLT 233

Query: 243 ETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVAT 302
           ET   +GR+ D++  + + +  L   I  +      Q  +T Q ATA+ EM+AS  EV+ 
Sbjct: 234 ETGGAVGRMADSAESIQELSVSLNETISHTRDRADSQSQQTSQAATAVEEMSASFNEVSQ 293

Query: 303 GAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEV 362
             +HAA     ++     G +++ +  Q+I  L  EVS    V+  +E+ S +I++VLEV
Sbjct: 294 NIQHAAEEMSMSHEAAEKGHELLVEVIQAIKGLHQEVSNFSAVVASIEQDSQEINEVLEV 353

Query: 363 IRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGR 422
           IR IA+QTNLLALNAAIEAARAGESGRGFAVVADEVR L++RT +ST  I+ ++   +  
Sbjct: 354 IRGIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSSRTSESTSHIEAIVSKFRDS 413

Query: 423 AKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEI 482
              A   M+   +QA  SV  AQQ   +   +   +  I  MS   A A+ QQ+AV+ EI
Sbjct: 414 TLKASQTMQAGQRQAQHSVGLAQQVDASFEELRASIDKINQMSDANAAAMSQQTAVASEI 473

Query: 483 NHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQFWERN 528
           + SI  I   A  ++   +  A+    V  LS     L+QQFW ++
Sbjct: 474 SQSIQLINELALASLSQTQAAAERGGQVERLSAKTHHLSQQFWRQS 519