Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  290 bits (743), Expect = 7e-83
 Identities = 186/534 (34%), Positives = 287/534 (53%), Gaps = 23/534 (4%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           M+ NLPVT   +       I+S T     ITY N  F+++SGF  +ELIG+ HN+VRHPD
Sbjct: 1   MKNNLPVTQVEVPFIKGKYIVSKTDLKGIITYANDTFVELSGFTRDELIGKNHNLVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MPPAAFA +W ++K GR W G+VKNRCKNGDHYWV A  +P+ + G+ + Y SVRT+P  
Sbjct: 61  MPPAAFADLWISVKEGRPWRGIVKNRCKNGDHYWVDALVVPVRQKGQTIGYMSVRTEPSR 120

Query: 125 SHVQAAEKAYAQLRNGKNILPK--------IRLGFHWKLILLVWGSLFASIAI------- 169
           + VQ+AE  YA+L  G   +P+        +R       + ++   L   I +       
Sbjct: 121 AQVQSAEALYAKLGKGGGAIPRPGGWRKVSLRKKMAGLTLFVMAAQLLTGIGVWFGSGIG 180

Query: 170 VSLIYPSALMSILFLTLLVGSITTLGITY-LLVPMKRLIQSYCKDSDNPLSQVLYTGRSD 228
            S     AL+ IL LT LV     +G+   +   +     S  + +   LS+ L+  R D
Sbjct: 181 FSADSIVALVQILSLTGLVAGAVQIGLQQGIFRAIDATNSSLDRVAQGDLSEDLWHDRLD 240

Query: 229 EFGQLEFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILT-SEQQAET-EQV 286
           E G+L+ +L   QA    ++  I +A+N+++   N    N+E S++ + SE Q+++  ++
Sbjct: 241 EVGKLQDSLLTTQAHLKVMLAEIAEAANRVS--GNTTQLNLEMSSVSSQSESQSDSVSRI 298

Query: 287 ATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVI 346
           A ++ EM+A++++V+  A+  A++  +        +Q + Q  ++   +   V  A   +
Sbjct: 299 AASMEEMSATVEQVSADAQETASAVGTTRERIAGVEQRMIQGREASRAVVSAVDTASNTM 358

Query: 347 HELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQ 406
             L +  N I  V + I+ IADQTNL+ALNAAIEAARAGE+GRGFAVVADEVR LA RT+
Sbjct: 359 ATLFQSLNRIGVVTQGIQEIADQTNLIALNAAIEAARAGEAGRGFAVVADEVRKLAERTR 418

Query: 407 QSTMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSV 466
             T +I  M+  +Q   + AV  +E +  Q   + E   +   +L  + +    I  M+ 
Sbjct: 419 LQTAEIAEMVTEIQKITESAVGSIESAGAQVGHNDEAMGETGVSLAEVVQDGQHIDEMAR 478

Query: 467 QMATAVDQQSAVSDEINHSISNIRMAADTN---VDNGKINAKCAEGVAGLSHNL 517
            +A A  QQS  S ++  S+S I    + N   +   + N +     AG   NL
Sbjct: 479 HIAQATVQQSQASQDVAMSVSEIAALIEENAAAIGEAERNVQQLLATAGELRNL 532