Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  219 bits (559), Expect = 2e-61
 Identities = 138/358 (38%), Positives = 206/358 (57%), Gaps = 10/358 (2%)

Query: 177 ALMSILFLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQV----------LYTGR 226
           A+  I F  +++G I  L  T +   + + I     ++ N L+ +          +    
Sbjct: 275 AMSDIRFKLIMIGFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVKS 334

Query: 227 SDEFGQLEFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQV 286
            DE  QL  A      +  A + ++ D+++ L   A ++     ++  +   Q  ETEQV
Sbjct: 335 KDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQV 394

Query: 287 ATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVI 346
           ATA+NEMAA++QEVA  A  AA+++  A+  T  G+ +V +   +I+ L  E++ A + I
Sbjct: 395 ATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAI 454

Query: 347 HELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQ 406
           +ELE ++  I  VL VIR+IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RTQ
Sbjct: 455 NELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQ 514

Query: 407 QSTMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSV 466
            ST +IQ+MI+ LQ  AK  V+ M  S+      V    +A +AL  I + VS I+ M++
Sbjct: 515 ASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNI 574

Query: 467 QMATAVDQQSAVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
           Q+A+A ++Q AVS EIN +++NI        ++    A+  + +A LS  L+ L  QF
Sbjct: 575 QIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMRLTTLLAQF 632