Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  344 bits (882), Expect = 5e-99
 Identities = 200/513 (38%), Positives = 299/513 (58%), Gaps = 9/513 (1%)

Query: 18  LSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPDMPPAAFAHMWSTL 77
           LS +  +LSTT    +I YVN  F +IS ++  EL G PHN+VRH DMP AAF  +W  +
Sbjct: 12  LSENAILLSTTDLKGNIKYVNQTFSQISEYSVAELQGSPHNIVRHEDMPAAAFKMLWDRI 71

Query: 78  KSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEPSHVQAAEKAYAQL 137
           K+G+ WMG+VKN+ KNG +YWV+A+  P+ ++GK+ EYQSVR +  P  ++AAE+ Y  +
Sbjct: 72  KTGKPWMGIVKNKTKNGSYYWVNAYVAPVYEDGKIHEYQSVRRQATPEQIRAAEEVYLAI 131

Query: 138 RNGKNI--LPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSILFLTLLVGSITTLG 195
             GK    L K RLGF  K++     ++F +IA  + +   A  S L   L+ G I    
Sbjct: 132 NQGKQAKTLKKDRLGFRGKILT----AMFVAIAATASL---ACYSPLLAALVGGLIAWFL 184

Query: 196 ITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQAETSAVIGRIGDAS 255
              L+ P++ L+       D+P++  +YTGR DE G+++ ALR   +E   V+GR+ D++
Sbjct: 185 WYKLMQPLQALVSVATNIIDDPVAMGIYTGRQDEIGKIDLALRFLISEIGGVVGRMADSA 244

Query: 256 NQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVATGAKHAANSSESAN 315
           +++ + + +L   I  +      Q A+T Q ATA+ +M+AS  EV       A+   S++
Sbjct: 245 SEIQEQSVNLKQTITNTWEHADSQSAQTTQAATAMEQMSASFAEVTDNIHRTASEMVSSH 304

Query: 316 HETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEVIRSIADQTNLLAL 375
                G   +    ++I +L  +VS    V+  +E+ S  I +VLEVIR+IADQTNLLAL
Sbjct: 305 EAAQRGHSRLETVIEAIHQLSVQVSHFSDVVQTIEQDSQAIHQVLEVIRAIADQTNLLAL 364

Query: 376 NAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGRAKLAVAVMEHSSQ 435
           NAAIEAARAGESGRGFAVVADEVR L++RT QST  I+ ++   +   + A + M    +
Sbjct: 365 NAAIEAARAGESGRGFAVVADEVRQLSSRTSQSTSQIELIVSRFRDSTQRATSTMTAGQE 424

Query: 436 QALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEINHSISNIRMAADT 495
           Q   SV  AQ A+ A   +   +S I  +S   A A+ QQ+ V+ EI+ +I  I   A  
Sbjct: 425 QVKRSVSLAQDASVAFGELLSSISRINSLSDDNAAAMTQQTTVAAEISRAIHVISDLAQQ 484

Query: 496 NVDNGKINAKCAEGVAGLSHNLSELAQQFWERN 528
           ++   +  A   E V+ LS     L+QQFW+++
Sbjct: 485 SLQQTQDAAARGEQVSRLSTKTHHLSQQFWQQS 517