Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  301 bits (771), Expect = 4e-86
 Identities = 188/488 (38%), Positives = 273/488 (55%), Gaps = 20/488 (4%)

Query: 16  IELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPDMPPAAFAHMWS 75
           I L+    ++STT     ITYVN  F ++SG++ +ELIG PHN VRHPDMP AAF  MW 
Sbjct: 19  IRLTPQDELISTTNTRGIITYVNQRFAEVSGYSADELIGHPHNKVRHPDMPSAAFKEMWE 78

Query: 76  TLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEPSHVQAAEKAYA 135
            LKSG+SW G+VKNRCKNGD YWV AF  PI +NG +V YQSVR +P+ ++V  A   Y 
Sbjct: 79  KLKSGQSWRGIVKNRCKNGDFYWVDAFVSPIFENGTIVGYQSVRLQPQAAYVSKATAIYR 138

Query: 136 QLRNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMS---ILFLTLLVGSIT 192
           +L + K I PK        L L+   ++ A +A   L+          I+   +L+G   
Sbjct: 139 RLLHNKPI-PK-------PLSLMQKRAVSAVVASTGLLIAGYFWGWGVIIAGAILMG--L 188

Query: 193 TLGITY---LLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQAETSAVIG 249
            L I Y     +P K +      DS   +S+ +Y G +D    L+F L + QA+ + V+G
Sbjct: 189 NLAIFYDEAFRIPAKLIDMQTKYDS---ISRYIYAG-ADTSSILDFQLILLQAKMNGVLG 244

Query: 250 RIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVATGAKHAAN 309
           R  D +NQL+  A+ L+   E++     +++ + EQ+A+A+ EM+++I EVA   +  + 
Sbjct: 245 RTQDQANQLHAIADQLVVTTEQTYASLDQEKNQLEQLASAMEEMSSTITEVAQNTQRTST 304

Query: 310 SSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEVIRSIADQ 369
           S  +A    +     +   +Q + +L   V+ A    + L + +  ++  +  I SIA+Q
Sbjct: 305 SINTAYELCLKSSANMKANTQKVEQLAKSVADAANNANLLNQEAERVASAMGEIDSIAEQ 364

Query: 370 TNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGRAKLAVAV 429
           TNLLALNAAIEAARAGE GRGFAVVADEVR L++RTQ ST  I + +D +          
Sbjct: 365 TNLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVDKMFSMLNAWAKE 424

Query: 430 MEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEINHSISNI 489
           ME S Q A       Q +A+ +  I + VS+I   + Q A A DQQ  V  EI ++I  I
Sbjct: 425 MEQSRQHAERCANDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQVVHEITNNIHFI 484

Query: 490 RMAADTNV 497
             ++  N+
Sbjct: 485 TQSSSENL 492