Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  368 bits (944), Expect = e-106
 Identities = 207/489 (42%), Positives = 296/489 (60%), Gaps = 11/489 (2%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MRK LPVT    +  +   +LSTT   SHITY N  F  ++G+   +++GQ HNMVRHP 
Sbjct: 1   MRKKLPVTQREYDYPADWILLSTTDTQSHITYANQSFCMVAGYTLNDMLGQTHNMVRHPY 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MPP AF  +W T++ G  W G+VKNRC NGDHYWV A+  PI+ NG+V E+QSVRTKP  
Sbjct: 61  MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIMINGQVAEFQSVRTKPSR 120

Query: 125 SHVQAAEKAYAQLRNGK--NILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL 182
             +Q A+ AYA+L      N L +I L    KL LL        +A++ ++Y +  M  +
Sbjct: 121 EQIQRADSAYAELNKSGHVNALKRI-LDMPTKLALL------GLVALLPMLYLALQMGAM 173

Query: 183 FLTLLVGSITTL--GITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMA 240
               L  S+  L  G   +L   + L+    K  DNPL   +YTG+SD+ G +E AL+M 
Sbjct: 174 GFVALAISVLVLFIGGNLILGRYRALVAKAKKIYDNPLMAYIYTGQSDDLGAIELALQMQ 233

Query: 241 QAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEV 300
            +E  +V+GR  D+ +++ + A       E+    +  Q AE EQVATA+ +M A++ ++
Sbjct: 234 NSELKSVLGRARDSCDKVTQEAKVSAAKGEEIQSTSQSQLAEIEQVATAMQQMTATLVDM 293

Query: 301 ATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVL 360
           ++    AA++S+ A+ +TI+G + V     SI  +  ++    +VI ELE HS DI +VL
Sbjct: 294 SSNCADAASASQMASEQTINGDKTVVSTIHSIQTMAQQLHATSKVITELEGHSKDIGRVL 353

Query: 361 EVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQ 420
           +VI+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  +T +I  MI+ LQ
Sbjct: 354 DVIQGIAEQTNLLALNAAIEAARAGELGRGFAVVADEVRALAKRTHDATKEIHSMINLLQ 413

Query: 421 GRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSD 480
                AV  M    + A   +  A  A  AL  I + ++ IT M+  +A+AV++QS+V++
Sbjct: 414 LGTNKAVRSMHEGVEAASECITTADLAGAALRTIREAIATITDMNHHIASAVEEQSSVAN 473

Query: 481 EINHSISNI 489
           E+N S+ N+
Sbjct: 474 EMNRSVVNV 482