Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., methyl-accepting chemotaxis protein from Burkholderia phytofirmans PsJN

 Score =  244 bits (624), Expect = 5e-69
 Identities = 175/545 (32%), Positives = 271/545 (49%), Gaps = 55/545 (10%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVTGH  E  SS  ++S T     I Y NP F+ +SGF  +ELIGQPHN++RHPD
Sbjct: 1   MRNNQPVTGHEYEFPSSHMLVSATDLTGRIQYCNPAFIAVSGFTRDELIGQPHNLIRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MP  AFA +W+T++ GR W  LVKNR KNGDHYWV A   P+++ G VV Y SVR KPE 
Sbjct: 61  MPREAFADLWATIRDGRPWTALVKNRRKNGDHYWVHANVTPVVEKGAVVGYLSVRVKPER 120

Query: 125 SHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGSLFASIAI-----VSLIYPSALM 179
           + V+AAE  YA++R+G++   ++R G   +  +L  G L A + +      +L Y    +
Sbjct: 121 TAVRAAEALYARMRSGESRGVQLRRGVVVRTGVL--GRLQALMRLPVATRAALGYAITPL 178

Query: 180 SILFLTLLV-------------GSITTLGITYLLV-------PMKRLIQSYCKDSDNPLS 219
           ++L   L               G  T + I   L+       P++ +     + +   L+
Sbjct: 179 ALLLTGLAAWQGAPPAPFWIGFGVATAVSIASCLMLTRQLAAPVRDMSGFATRLAAGDLT 238

Query: 220 QVLYTGRSDEFGQLEFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQ 279
             L   R D+ G +  AL   +A  +A++    D   Q+     D    I   N+   + 
Sbjct: 239 ADLQIARHDDLGDVLQALNQLKANLAAIVY---DVRAQITGML-DNAREISSGNV---DL 291

Query: 280 QAETEQVATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEV 339
              TE  A ++ E AA+++E+ T  +  A++       T+    +  +A  +        
Sbjct: 292 ARRTELQAASLEETAATMEELTTTVQANADA-------TVRALDLAREAQAAAAVGGKIA 344

Query: 340 SQAKQVIHELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVR 399
            Q +Q +  +   S  I+ +  VI  IA QTN+LALNAA+EAARAGE+GR FAVVA EVR
Sbjct: 345 GQVEQTMAGITAASRRIADITGVIDGIAFQTNILALNAAVEAARAGEAGRSFAVVAGEVR 404

Query: 400 GLAARTQQSTMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVS 459
            LA R   S+ +I+              +V+E S+ +     E   +    +  I + V 
Sbjct: 405 MLAQRCAASSKEIK--------------SVVEASASEVAAGTELVARTTSQMRVIDEAVG 450

Query: 460 DITGMSVQMATAVDQQSAVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSE 519
            ++ + V +A A  +Q+    ++N ++S++  A   N    +  A  A+ +A  +  L E
Sbjct: 451 RVSSIIVDVANASSEQAEGIRQVNQAVSHLDGATQQNAALVEQAAATAQRLAEQADVLDE 510

Query: 520 LAQQF 524
             + F
Sbjct: 511 AVRLF 515