Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  225 bits (574), Expect = 3e-63
 Identities = 132/312 (42%), Positives = 192/312 (61%)

Query: 213 DSDNPLSQVLYTGRSDEFGQLEFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKS 272
           + +  L++ +     DE  QL  A      +  A + ++ D+++ L   A ++     ++
Sbjct: 321 EGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHET 380

Query: 273 NILTSEQQAETEQVATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSI 332
             + + Q  ETEQVATA+NEMAA++QEVA  A  AA+++  A+  T  G+ +V +   +I
Sbjct: 381 QQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTI 440

Query: 333 TELEHEVSQAKQVIHELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFA 392
           + L  E++QA   I+ELE ++  I  VL VIR+IADQTNLLALNAAIEAARAGE GRGFA
Sbjct: 441 SLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFA 500

Query: 393 VVADEVRGLAARTQQSTMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALT 452
           VVADEVR LA+RTQ ST +IQ+MI+TLQ  AK  V+ M  S+      V    +A  AL 
Sbjct: 501 VVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALE 560

Query: 453 GIGKRVSDITGMSVQMATAVDQQSAVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAG 512
            I + VS I+ M++Q+A+A ++Q AVS EIN +++NI   A    ++    A+  + +A 
Sbjct: 561 AITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQ 620

Query: 513 LSHNLSELAQQF 524
           LS  L+ L  QF
Sbjct: 621 LSMRLTTLLSQF 632



 Score = 25.8 bits (55), Expect = 0.005
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 17/135 (12%)

Query: 205 RLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQAETSAVIGRIGDASNQLNKFAND 264
           R + S  + S   + Q++ T +      +  ++  + A T + +  + +A + L      
Sbjct: 507 RTLASRTQASTTEIQQMIETLQQSAKATVS-SMNTSTATTQSCVSLVHEAGSALEAITQ- 564

Query: 265 LLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVATGAKH----AANSSESANHETIS 320
            +  I + NI          Q+A+A NE  A   E+     +    A N++ESA     +
Sbjct: 565 AVSTISQMNI----------QIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARA 614

Query: 321 GQQIVSQASQSITEL 335
           G ++ +Q S  +T L
Sbjct: 615 GDEL-AQLSMRLTTL 628