Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  303 bits (776), Expect = 1e-86
 Identities = 184/500 (36%), Positives = 269/500 (53%), Gaps = 44/500 (8%)

Query: 16  IELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPDMPPAAFAHMWS 75
           + L+    ++STT     ITYVN  F ++SG+  EELIGQPHN VRHPDMP AAF  MW 
Sbjct: 21  VRLTPQDELISTTDTRGIITYVNQRFAEVSGYKAEELIGQPHNKVRHPDMPSAAFKEMWE 80

Query: 76  TLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEPSHVQAAEKAYA 135
            LKSG+SW G+VKNRCKNG  YWV AF  P+ +NG ++ YQSVR +P+ ++V  A   Y 
Sbjct: 81  KLKSGQSWRGIVKNRCKNGGFYWVDAFVSPLFENGTIIGYQSVRIQPQAAYVSKATDIYR 140

Query: 136 QLRNGKNILPKIRL------------------GFHWKLILLVWGSLFASIAIVSLIYPSA 177
           +L   K I   + L                  G+ W      WG +FA   ++SL     
Sbjct: 141 RLVQNKPIPKPLSLMQKRFVSAVVATTGLLIAGYFWG-----WGVIFAGAILMSL----- 190

Query: 178 LMSILFLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFAL 237
                   L +       I   LV M+    S        +S+ +Y+G +D    L+F L
Sbjct: 191 -------NLAIFYDEAFRIPAKLVEMQEKYDS--------ISRYIYSG-ADTSSILDFQL 234

Query: 238 RMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASI 297
            + QA+ + V+GR  D ++ L+  A+ L+   E++ +   +++ + EQ+A+A+ EM+++I
Sbjct: 235 ILLQAKMNGVLGRTQDQAHHLHAIADQLVVTTEQTYVSLDQEKNQLEQLASAMEEMSSTI 294

Query: 298 QEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDIS 357
            EVA   +  + S  +A    +     +   +Q + +L   V+ A    H+L + +  ++
Sbjct: 295 AEVAQNTQLTSTSINTAYDLCLKSSANMKANTQKVEQLAKSVADAANNAHQLNKEAERVA 354

Query: 358 KVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMID 417
             +  I SIA+QTNLLALNAAIEAARAGE GRGFAVVADEVR L++RTQ ST  I + +D
Sbjct: 355 SAMGEIDSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVD 414

Query: 418 TLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSA 477
            +          ME S Q A L     Q +A+ +  I + VS+I   + Q A A DQQ  
Sbjct: 415 KMFSMLNAWAKEMEQSRQHAELCANDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQ 474

Query: 478 VSDEINHSISNIRMAADTNV 497
           V  EI ++I +I   +  N+
Sbjct: 475 VVHEITNNIHSITQTSSENL 494