Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  348 bits (893), Expect = e-100
 Identities = 200/514 (38%), Positives = 305/514 (59%), Gaps = 11/514 (2%)

Query: 18  LSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPDMPPAAFAHMWSTL 77
           LS +  +LSTT    +I YVN  F +IS ++  EL G PHN+VRH DMP AAF  +W  +
Sbjct: 12  LSENAILLSTTDLKGNIKYVNQTFSQISEYSVAELQGSPHNIVRHGDMPSAAFKMLWERI 71

Query: 78  KSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEPSHVQAAEKAYAQL 137
           +SG+ WMG+VKNR KNG +YWV+A+  P+ +NGK+ EYQSVR +  P  ++AAE+ Y  +
Sbjct: 72  RSGKPWMGIVKNRTKNGGYYWVNAYVAPVYENGKIHEYQSVRRQATPEQIKAAEEIYQGI 131

Query: 138 RNGKN--ILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSILFLTLLVGSITTLG 195
             G+    L K RLGF  K+++    ++  +IA+ + +   + +    L  L G +  LG
Sbjct: 132 NQGQQPKALKKDRLGFRGKILM----AMLFTIALTAYLATYSPI----LAALAGGLLALG 183

Query: 196 ITYLLV-PMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQAETSAVIGRIGDA 254
           + Y+L+ P + L+Q      D+P++  +YTGR DE G+L+ ALR    E   V+GR+ D+
Sbjct: 184 LWYMLMQPFQALVQVASNIIDDPVAMGVYTGRQDEIGKLDLALRFLITEIGGVVGRMADS 243

Query: 255 SNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVATGAKHAANSSESA 314
           ++++ + + +L   I  +      Q A+T Q ATA+ +M+AS  EV       A+   S+
Sbjct: 244 ASEIQEQSVNLKQTITNTWEHADSQSAQTTQAATAMEQMSASFAEVTDNIHRTASEMVSS 303

Query: 315 NHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEVIRSIADQTNLLA 374
           +     G   +    ++I +L  +VS    V+  +E+ S  I +VLEVIR+IADQTNLLA
Sbjct: 304 HEAAQRGHSRLETVIEAIHQLSVQVSHFSDVVQTIEQDSQAIHQVLEVIRAIADQTNLLA 363

Query: 375 LNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGRAKLAVAVMEHSS 434
           LNAAIEAARAGESGRGFAVVADEVR L++RT QST  I+ ++   +   + A + M    
Sbjct: 364 LNAAIEAARAGESGRGFAVVADEVRQLSSRTSQSTSQIELIVSRFKDSTQKATSTMTAGQ 423

Query: 435 QQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEINHSISNIRMAAD 494
           +Q   SV  AQ A+ A   +   ++ I  +S   A A+ QQ++V+ EI+ +I  I   A 
Sbjct: 424 EQVKRSVSLAQDASIAFGELLSSIARINSLSDDNAAAMTQQASVAAEISRAIHVISDLAQ 483

Query: 495 TNVDNGKINAKCAEGVAGLSHNLSELAQQFWERN 528
            +++  +  A   + V+ LS     L+QQFW+++
Sbjct: 484 QSLEQTQDAAARGDQVSRLSTKTHHLSQQFWQQS 517