Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  382 bits (981), Expect = e-110
 Identities = 217/527 (41%), Positives = 320/527 (60%), Gaps = 9/527 (1%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MRKNLPVT    +  +   +LSTT   SHITY NP F  ++G+    ++G PHNMVRHPD
Sbjct: 1   MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MPP AF  +W T++ G  W G+VKNRC NGDHYWV A+  PI+ NG+V E+QSVRTKP  
Sbjct: 61  MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSR 120

Query: 125 SHVQAAEKAYAQL-RNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL- 182
             +  AE AYA+L +NG+    K  L    KL LLV       +A++ ++Y +  + ++ 
Sbjct: 121 EQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVL------VALLPMLYLALQIGVVG 174

Query: 183 FLTLLVGSITT-LGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQ 241
           F+ L + ++   +G   +L   + L+    K  DNPL   +YTG+SD+ G ++ AL+M  
Sbjct: 175 FVGLAISALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQN 234

Query: 242 AETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVA 301
           +E  +V+GR  D+ + +++ A       E+    +  Q AE EQVATA+ +M A++ +++
Sbjct: 235 SELKSVLGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMS 294

Query: 302 TGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLE 361
           +    AA++S+ A+ +TI+G + V    QSI  +  ++ +  QVI ELE HS DI +VL+
Sbjct: 295 SNCADAASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLD 354

Query: 362 VIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQG 421
           VI+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  +T +I  MI+ LQ 
Sbjct: 355 VIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHDATKEIHTMINLLQQ 414

Query: 422 RAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDE 481
               AV  M+     A   +  A  A  AL  I + ++ IT M+  +A+AV++QS+V++E
Sbjct: 415 GTHKAVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANE 474

Query: 482 INHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQFWERN 528
           +N S+ N+     ++   G       + V G  ++ + L  QF +R+
Sbjct: 475 MNRSVVNVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQFLKRS 521