Pairwise Alignments

Query, 174 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 139 a.a., Fimbrial protein pilin from Pseudomonas syringae pv. syringae B728a

 Score = 46.6 bits (109), Expect = 2e-10
 Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 6/78 (7%)

Query: 1  MSKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESALTLLHSQA 60
          M+  +GFTLIEL+I + I+G++A +A P++ + +  A+ + ++SVA+  ++A+ +     
Sbjct: 1  MNAQKGFTLIELMIVVAIVGILAAVAIPQYRDYTMRARFSDVVSVASTYQTAVAV----- 55

Query: 61 LIEGQDIGKG-EITINGV 77
           I+ Q +  G  +  NG+
Sbjct: 56 CIQTQGVANGCNLNTNGI 73