Pairwise Alignments

Query, 174 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 201 a.a., MSHA pilin protein MshB (RefSeq) from Shewanella amazonensis SB2B

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 42/119 (35%), Positives = 75/119 (63%), Gaps = 7/119 (5%)

Query: 2   SKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESALTLLHSQAL 61
           +K QGF+LIEL+I IVILG++A  A PRF+NI+ +A+A ++ +V+ G+ +A++ + +Q  
Sbjct: 3   AKQQGFSLIELVIVIVILGLLAATAIPRFLNITDEAEAASVDAVSGGLVTAVSFVRAQWE 62

Query: 62  IEGQDIGKGEITINGVKTPLLN--GYPS-VNGKDSFEEINAQVQAWFN--IDSVGKNVI 115
           I+G++     + ++G +  L    GYP+  N   + +  +A  Q  FN  + S  +NV+
Sbjct: 63  IDGRN--NDYVLLDGTQIGLDKRFGYPTGDNNVSATDMTDATCQQVFNLILQSTPRNVL 119