Pairwise Alignments

Query, 174 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 178 a.a., pilin, putative (RefSeq) from Shewanella loihica PV-4

 Score = 53.9 bits (128), Expect = 1e-12
 Identities = 21/55 (38%), Positives = 40/55 (72%)

Query: 1  MSKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESALTL 55
          ++  +GFTLIEL++ I++LG++AV A P+FIN+S+DA+  ++ +     +S + +
Sbjct: 3  LAHKRGFTLIELVVVIIVLGILAVTALPKFINLSQDAQVASVKATGGAFKSGIDM 57