Pairwise Alignments

Query, 174 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 163 a.a., methylation site containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 75.5 bits (184), Expect = 4e-19
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 21/179 (11%)

Query: 1   MSKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESALTLLHSQA 60
           M+K +GFTLIEL++ I+ILG++AV AAP+FIN+  DA+ +T+  +   ++ A TLL+S+A
Sbjct: 1   MNKQKGFTLIELVVVIIILGILAVTAAPKFINLQSDARKSTVEGMKGALQGANTLLYSKA 60

Query: 61  LIEGQDIGKGEITINGVKTPLLNGYPSVNGKDSFEEINAQVQAWFNIDSVGKNVIEIDSS 120
            I+G++        N V T    G  + + K  +  + A              V+E+DS+
Sbjct: 61  AIQGKEKDANSNDANNVDT---TGDGTADTKAVYGYVKADATEL-------AKVLEVDSA 110

Query: 121 ----AAPFFIDKASSRNQIYIFFSDAPTTGDRTEYGCQVRYQNPESEG-PSVRVLTDDC 174
               AAP       S   I I  +D     D+    C + Y +  S   P  + + D+C
Sbjct: 111 DWTIAAP---AAGVSTADIIIHPADFTPAADKK---CFLEYTDATSSSLPVYKTVLDNC 163