Pairwise Alignments

Query, 174 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 163 a.a., MshA, mannose-sensitive haemaglutinin (RefSeq) from Shewanella loihica PV-4

 Score = 75.1 bits (183), Expect = 6e-19
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 24/179 (13%)

Query: 3   KNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESALTLLHSQALI 62
           K  GFTLIEL+I ++ILG++A IA PRFINI  DA+   +  + + M   L L+ ++A +
Sbjct: 2   KRNGFTLIELVITVIILGILATIALPRFINIQSDARIAALQGLKSEMSGTLPLVFTKASL 61

Query: 63  EG-QDIGKGEITINGVKTPLLNGYPSVNGKDSFEEI--NAQVQAWFNIDSVGKNVIEIDS 119
           E  Q      I++NG +  L  GYP+ +   +++ +   +   A FN D         ++
Sbjct: 62  ENLQTQASTNISLNGDQVELAYGYPAADSAHAWDLLLEASFADAVFNADDPADWYFH-NN 120

Query: 120 SAAPFF----IDKASSRNQIYIFFSDAPTTGDRTEYGCQVRYQNPESEGPSVRVLTDDC 174
            A PF       K SS    Y+ ++ A +T                ++GPS  ++   C
Sbjct: 121 KAEPFIRFMHPSKKSSSENCYLKYTQALST----------------TQGPSFEIVDSGC 163