Pairwise Alignments

Query, 146 a.a., ribonuclease H from Vibrio cholerae E7946 ATCC 55056

Subject, 158 a.a., ribonuclease HI (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.0 bits (193), Expect = 3e-20
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)

Query: 5   IYVDGAAPNNQYGCTRGGIGLVVMDEDNEIVHEESITINRKTDNAELELLALIEALEYAE 64
           I+ DG+   N      GG G+V+  + +     +  ++   T N  +ELLA I ALE  +
Sbjct: 9   IFTDGSCLGNP---GPGGYGIVMNYKGHTKEMSDGFSL---TTNNRMELLAPIVALEALK 62

Query: 65  DGD--VIYSDSDYCVKGFNIWMDDWKDRGWRRADKKPVKNRQLWQQVDELSSRKYVEVFK 122
           +    ++ SDS Y  +G   W+  WK +GW  +++ PVKN  LW+++D+ +    ++   
Sbjct: 63  EPCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRW 122

Query: 123 VKAHSGIEGNERADLLAVEAAEAD 146
           VK H+G   NER D LA  AAEA+
Sbjct: 123 VKGHAGHAENERCDQLARAAAEAN 146