Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Pseudomonas fluorescens FW300-N2E2

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 47/243 (19%)

Query: 49  GDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPN 108
           G   +  A L +E S G+I++R+         +     ++ G  D+   +S     + P+
Sbjct: 47  GQGAQKFADLLSEKSGGKIKVRLFPGGTLGGDVQTVSALQGGTLDITVLNSGILAAQAPD 106

Query: 109 TLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSD---------IQMG 159
                  PF                  L   V   H ++  P G            + +G
Sbjct: 107 YAMLD-FPF------------------LFNNVEEAHAVIDGPVGQKLAVQLDSKGLVALG 147

Query: 160 GW---------FKKEINSVDDLQGLKMRI---PGFAGEVLAKLGAKPTNIAPGELYTSLE 207
            W          K  +  ++D+QGLK+R+   P +  E  + LGA P  +A  E+YT LE
Sbjct: 148 YWDLGFRNLTNSKHPVTKLEDMQGLKIRVIQSPIYL-ETFSALGANPVPMAFPEVYTGLE 206

Query: 208 RGTIDALEWVGPAFDLRMG--FHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVIL 265
           + TID  E     F +  G  F+++  Y     H    ++  ++++K W+ L  D + ++
Sbjct: 207 QHTIDGQE---NPFTVIEGNKFYEVQKYLSVTGHIFNPQS-LIISQKTWNRLNDDEKAMI 262

Query: 266 ETA 268
            +A
Sbjct: 263 RSA 265