Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., TRAP-type large permease component from Sinorhizobium meliloti 1021

 Score = 42.4 bits (98), Expect = 2e-08
 Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 13/237 (5%)

Query: 63  SNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMIAT 122
           +NGR+ I +  A +      +   ++SG  DLG   +     ++P     ++ P+ + +T
Sbjct: 61  TNGRLSISVFPAGQLGNEAAMLQQMQSGALDLGWIMTAELGSRIPAVAAINA-PWVVDST 119

Query: 123 EQYAWFYYGG-GMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRI-- 179
            + A        M L++ + A    +    G + +++  +  KEI  +DD+ G+K+RI  
Sbjct: 120 AKVAKLVREPVAMKLLDVLPAETGTVGLAWGITTMRVV-FSAKEIAGLDDINGMKLRINT 178

Query: 180 -PGFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAPYYYTAW 238
            P +  +    LGA PT I    ++ ++  G +D LE     F     F K++       
Sbjct: 179 TPAYR-DFYQLLGAAPTPIPTPAVFDAMSNGQVDGLE-ADLDFSWNQRFDKVSK-TMLKM 235

Query: 239 HEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMKSEY 295
           +        L + + W TLP+  + I+    + A     ++ IDA   +  A+  ++
Sbjct: 236 NAIFMPCVALASGRVWQTLPEADREIIARLTKSA----LDEQIDATVANEPALLEKF 288