Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (RefSeq) from Shewanella amazonensis SB2B

 Score =  299 bits (766), Expect = 7e-86
 Identities = 145/319 (45%), Positives = 204/319 (63%), Gaps = 2/319 (0%)

Query: 37  LAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGH 96
           LA +W  N P LG AP++ A +  EMS GR++I++  A +    L VFD V  G   + H
Sbjct: 41  LATSWPKNFPGLGTAPEHFAVMVDEMSAGRLKIKVYGAGELMPALEVFDAVSQGSVQMAH 100

Query: 97  SSSYYWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDI 156
           S+SYYWKGK P   FF+S+PFG+ A E   W  YGGG  L E+VYAP  +L  PGGNS +
Sbjct: 101 SASYYWKGKAPAAQFFTSIPFGLNAQEMNGWLTYGGGQELWEEVYAPFGILPLPGGNSGV 160

Query: 157 QMGGWFKKEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEW 216
           QMGGWF KEIN++DDL+GLKMR+PG  GEVL +L   P  +   ELYT+++ G IDA EW
Sbjct: 161 QMGGWFNKEINTIDDLKGLKMRLPGLGGEVLKRLEGVPVTLPGRELYTAMQTGAIDATEW 220

Query: 217 VGPAFDLRMGFHKIAP-YYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFD 275
           VGP  DL  G HK+A  YYY  WHEPG+  +F++NK  ++ LPKD+Q I++ A +    D
Sbjct: 221 VGPYNDLAFGLHKVAKYYYYPGWHEPGTTLEFMINKAAFEKLPKDLQAIVKIAAKATNQD 280

Query: 276 MYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDS 335
           M ++    N  +  A+ +E+  + ++ FP  V+A LR  + E++ EQ++ DP+ K++ ++
Sbjct: 281 MLDEYTARNVGALDALVNEH-GVVLKQFPEEVMAQLRSVSAEVISEQSSQDPMMKKVNEA 339

Query: 336 QQAYLTKVRDWTRISTQAY 354
            + Y   VR +  IS  AY
Sbjct: 340 YREYEAGVRKYHLISEDAY 358