Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., TRAP dicarboxylate transporter- DctP subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 76/303 (25%), Positives = 124/303 (40%), Gaps = 37/303 (12%)

Query: 9   KSRIMLALVLSTVL--GTAQANEPPVYKLTLAETWGANTPILGDAPKNMAKLAAEMSNGR 66
           K  + + L+L  V+  G AQA + P+  +  +     +TP  G A +   KLA E + GR
Sbjct: 2   KLSVFMGLILGGVMIAGGAQAADEPIV-IKFSHVVAPDTP-KGKAAEMFKKLAEEGTAGR 59

Query: 67  IQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMIATEQYA 126
           +++ +   ++        + ++ G   +               L  S   FG +  +++ 
Sbjct: 60  VKVEVYPNSQLYKDKEELEALQLGAVQM---------------LAPSLAKFGPLGVKEFE 104

Query: 127 WFYYGGGMPLMEKVYAPHN------LLSFPGGNSDIQMGGW---FK-----KEINSVDDL 172
            F      P  + + A  +      LL    G     +  W   FK     K +   DDL
Sbjct: 105 VFDLPYIFPTKDVLRAVTDGPIGASLLKKLEGRGIKGLAYWDNGFKIFSANKPLLKPDDL 164

Query: 173 QGLKMRIPG--FAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKI 230
           +G+KMRI         +  LGA P  +A  E+Y +L+ G +D  E   P+       H++
Sbjct: 165 KGVKMRIQSSKVLDAEMRALGALPQVMAFSEVYQALQTGVVDGTE-NPPSNMYTQKMHEV 223

Query: 231 APYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAA 290
             +  T  +        +VNKK W+ LP DI+  LETA   +       A   N  S AA
Sbjct: 224 QKHA-TLTNHGYLGYAVIVNKKFWEGLPADIRAPLETAMADSTKFANAIAQQENDDSLAA 282

Query: 291 MKS 293
           MK+
Sbjct: 283 MKA 285