Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., TRAP transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 25/297 (8%)

Query: 7   LNKSRIMLA-LVLSTVLGTAQANEPPVYKLTLAETWGANTPILGDAPKNMAKLAAEMSNG 65
           + KS + LA + +  ++G A A  P V K +       NTP  G A     +LA + ++G
Sbjct: 1   MRKSILALASIAVFGLVGPAAAQSPIVIKFS--HVVAPNTP-KGMAADKFKELAEKYTDG 57

Query: 66  RIQIRIDSANKHKAPLGVFDMVKSGQYD-LGHSSSYYWKGKVPNTLFFSSMPFGMIATEQ 124
           ++++ +   ++        D +K G    L  S S +    V     F  +P+  I  + 
Sbjct: 58  KVKVEVYPNSQLFKDKEELDALKLGAVQMLAPSISKFGPAGVKEFEVFD-LPY--ILPDI 114

Query: 125 YAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFK-----KEINSVDDLQGLKMRI 179
            A      G P+  K++    LL   G          FK     K++ + +D +GLK RI
Sbjct: 115 AALRKVTNG-PVGAKLF---KLLDSKGMTGLAYWDNGFKIMSANKKLIAPEDYKGLKFRI 170

Query: 180 PGFAGEVL----AKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAPYYY 235
              + +VL      LGA P  +A  E+Y +L+ G +D  E   P+       H++  Y  
Sbjct: 171 Q--SSKVLDAQFRALGAIPQVLAFSEVYQALQTGVVDGQENT-PSNMYTQKMHEVQKYT- 226

Query: 236 TAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMK 292
           T  +        +VNK+ WD +P D++  L+ A + A     +Q+   NA +   MK
Sbjct: 227 TVTNHGYIGYAVIVNKQFWDGIPADVRAQLDKAMKEATEFGNSQSQKENAEALEEMK 283