Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., TRAP transporter, subunit DctP from Phaeobacter inhibens DSM 17395

 Score = 61.6 bits (148), Expect = 3e-14
 Identities = 66/313 (21%), Positives = 118/313 (37%), Gaps = 26/313 (8%)

Query: 40  TWGANTPILGDAPKNMAKLAAEMSN----GRIQIRIDSANKHKAPLGVFDMVKSGQYDLG 95
           TW   T       +++ K A +M N     R+QI +  A++      +F  ++ G  D  
Sbjct: 31  TWRMQTYAGAALAEHVVKPAIDMFNKIAGDRMQIELYYADQLVPTGELFRAMQRGTIDAV 90

Query: 96  HSSSYYWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLS---FPGG 152
            S           T+F    PF            Y   +P++   Y  + +        G
Sbjct: 91  QSDDDSMASPTDVTVFGGYFPFAS---------RYSLDVPVLFNKYGLNEIWDEEYSKVG 141

Query: 153 NSDIQMGGW------FKKEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSL 206
              I  G W       K  I S+ DL+G ++     AG  L++ G  P  +   ++  ++
Sbjct: 142 VKHISAGAWDPCHFATKDPIRSLADLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAM 201

Query: 207 ERGTIDALEWVGPAFDLRMGFHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILE 266
           + G +D + W G   D  +G+  +  Y+ T          F  N+ +W+ LP+D+Q    
Sbjct: 202 QTGELDGIAWSGITEDYTVGWADVTNYFLTNNISGAWAGSFFANQGRWNELPEDLQ---- 257

Query: 267 TAFRVAAFDMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASD 326
           T FRV     +           A ++   P +++   P    A +  A  +   E AA  
Sbjct: 258 TLFRVCCDQSHYYRQWWYWGGEADLRVNGPKMELTSIPDEEWATVEDAAYKFWDEIAAES 317

Query: 327 PLAKEIIDSQQAY 339
           P    +++  + Y
Sbjct: 318 PTKARVVEIIKKY 330