Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Dechlorosoma suillum PS

 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 67/277 (24%), Positives = 109/277 (39%), Gaps = 26/277 (9%)

Query: 7   LNKSRIMLALVLSTVLGTAQANEPPVYKLTLAETWGANTPILGDAPKNMAKLAAEMSNGR 66
           +  S +M  L+   +   A A +P V K +       +TP  G A    AK AAE++ G+
Sbjct: 1   MKMSHLMFGLLAGVLSCGAMAQQPIVIKFS--HVVAVDTP-KGMAADFFAKKAAELTKGK 57

Query: 67  IQIRI--------DSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFG 118
           +++ +        D        LG   M+       G      ++      +F +     
Sbjct: 58  VKVEVYPNSQLYKDKEEMEALQLGAVQMLAPSLAKFGPLGVREFEAFDLPYIFDNYEELH 117

Query: 119 MIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKMR 178
            + T          G  L+ K+  P  +      ++  +        I +  DL+G KMR
Sbjct: 118 KVTTGPV-------GAALLAKL-EPKGIKGLAYWDNGFKSFS-ANTPIKTPADLKGKKMR 168

Query: 179 IPG--FAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDL-RMGFHKIAPYYY 235
           I       E +  LGA P  +A  E+Y +L+ G +D  E   P  +L     H++  +  
Sbjct: 169 IQSSKVLEEEMRSLGALPQVMAFSEVYQALQTGVVDGTE--NPISNLYTQKMHEVQKHLT 226

Query: 236 TAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVA 272
              H        +VNKK WD LP D++  LETA + A
Sbjct: 227 LTDHGYLGYA-VIVNKKFWDGLPADVRGQLETAMKDA 262