Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., TRAP-type D-lactate transporter, periplasmic component (from data) from Marinobacter adhaerens HP15

 Score =  100 bits (249), Expect = 7e-26
 Identities = 73/281 (25%), Positives = 133/281 (47%), Gaps = 17/281 (6%)

Query: 2   PITTYLNKSRIMLALVLSTVLGTAQANEPPVYKLTLAETWGANTPILGDAPKNMAKLAAE 61
           P  ++L    +   L  + ++G  QA     +K+    TW A T +     +   K    
Sbjct: 39  PRRSFLKTIAMGATLAGAMLMGAGQAQAATTWKIQ--STWDAGT-VGYTLFEEWCKSIEA 95

Query: 62  MSNGRIQIRIDSANKHKAPLG-VFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMI 120
            S G ++ +   A    A    +FD V++G     +  + YW GK+P ++F SS P G  
Sbjct: 96  KSGGELKFQCFPAKAVAADNNALFDAVRNGVLQGMNPFTLYWAGKIPASVFLSSYPAGPD 155

Query: 121 ATEQYAWFYYGGGMPLMEK---VYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKM 177
              Q+   +Y  GM  +EK   +Y    L        D  +    K+ +NS+DDL+G+K+
Sbjct: 156 QPHQWDTMFYSMGM--LEKTREIYKKFGLFYVGPIQHDANIIH-SKQPVNSLDDLKGMKI 212

Query: 178 RIPG-FAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAPYY-- 234
           R+PG    EV  + G    ++   +++ +LE+GTIDA ++VGPA +  +GF ++  Y   
Sbjct: 213 RVPGGMVAEVFQQFGVSTVSLPGSDIFPALEKGTIDAADFVGPAVNYELGFSQVTDYIIF 272

Query: 235 ----YTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRV 271
                 + ++P       V+ + W+++  ++Q ++E   R+
Sbjct: 273 GPPGVMSIYQPVDLMDLTVSLRAWNSISPELQQLVEDEVRI 313