Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., extracellular solute-binding protein, family 7 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  294 bits (753), Expect = 2e-84
 Identities = 144/329 (43%), Positives = 213/329 (64%), Gaps = 6/329 (1%)

Query: 30  PPVYKLT---LAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDM 86
           PPV ++    LA +W  N P LG AP+  A L  +MS+G+++I +  A +      VFD 
Sbjct: 38  PPVKQVIEWRLATSWPKNFPGLGMAPERFATLVNDMSHGQLRITVHGAGELMPAFAVFDG 97

Query: 87  VKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNL 146
           V  G+  + H++SYYWKGK P + FFSS+PFGM A E   W +YGG M L E+VY P  +
Sbjct: 98  VSQGKIQMAHAASYYWKGKTPASQFFSSIPFGMTAQEMNGWLHYGG-MALWEEVYRPFGI 156

Query: 147 LSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSL 206
           +   GGN+ +QMGGWF K IN++ D +GLK+R+PG  GEVL ++GA P N+A  EL+++L
Sbjct: 157 IPLAGGNTGMQMGGWFNKPINTIADFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELFSAL 216

Query: 207 ERGTIDALEWVGPAFDLRMGFHKIAP-YYYTAWHEPGSETQFLVNKKKWDTLPKDIQVIL 265
           + G++DA EWVGP  DL  G HK+A  YYY  WHEPGS  +FL+NK  +++LP+D+Q ++
Sbjct: 217 QTGSLDAAEWVGPVNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKAAFESLPEDLQTVV 276

Query: 266 ETAFRVAAFDMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAAS 325
           +TA R    DM ++   +N T+   +  E   +++R FPPAVL  L + +++++ EQA  
Sbjct: 277 KTAARAINQDMLDEYTTSNVTALETLVKE-EGVELRAFPPAVLTELERISHQVIGEQAEQ 335

Query: 326 DPLAKEIIDSQQAYLTKVRDWTRISTQAY 354
           DP+  ++  +  AY   VR++ +IS  AY
Sbjct: 336 DPMMGKVYRAYHAYEQGVREYHKISEDAY 364