Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 18/184 (9%)

Query: 163 KKEINSVDDLQGLKMRIPGFAGEVL--AKLGAKPTNIAPGELYTSLERGTIDALEWVGPA 220
           KK I + DDL+ LK+R      EV   + LG  PT ++ GE YT+L++GT+D     G  
Sbjct: 162 KKPIKTADDLKNLKVRTTDSPIEVAVASALGMNPTPVSWGETYTALQQGTVDG---EGNT 218

Query: 221 FDLRMGFHKIAPYYYTAWHEPGSETQF-----LVNKKKWDTLPKDIQVILETAFRVAAFD 275
           F    G    A +     H   S   +     ++NK  +D LP D+Q IL  + + A   
Sbjct: 219 F----GLLNDAKHTEVLRHAMDSAHNYSMHLLMINKAYFDKLPADVQQILVDSGKEAL-- 272

Query: 276 MYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDP--LAKEII 333
            Y +AI  +    A        I +    P   A +R+    +  + +   P  L K + 
Sbjct: 273 AYQRAISNDLEKKAEQAFVERGIVITKLAPEERAKMRELTRPVWDKFSNDIPADLVKLVQ 332

Query: 334 DSQQ 337
           ++QQ
Sbjct: 333 ETQQ 336