Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 54.7 bits (130), Expect = 4e-12
 Identities = 68/271 (25%), Positives = 110/271 (40%), Gaps = 17/271 (6%)

Query: 12  IMLALVLSTVLGTAQANE-PPVYKLTLAETWGANTPILGDAPKNMAKLAAEMSNGRIQIR 70
           ++LAL L     T  A E  P Y+L+     G   P  G A +  A L  E + GRI I+
Sbjct: 6   VLLALCLVFTSLTVNAAEYKPEYRLSTV--LGPAFP-WGRAAERWANLVRENTEGRINIK 62

Query: 71  IDSANKHKA--PLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMIATEQYAWF 128
           +              F  ++ G  D+   SS  W  +V     FS +PF M   + +   
Sbjct: 63  VYPGTSLVGGDQTKEFTAIRQGVIDMAVGSSINWSPQVKQLNLFS-LPFLMPDEKAFDAL 121

Query: 129 YYGGGMPLMEKVYA---PHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRIPGFAGE 185
             G   P+   ++A      ++    G +  +     K  + S  DL+GLK+R+ G    
Sbjct: 122 TTG---PVAADIFAILDKQGVVPLAIGENGFRELSNSKVNVTSPADLKGLKIRVVGSPIF 178

Query: 186 V--LAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAPYYYTAWHEPGS 243
           +     LGA PT ++  +   +L    +D  E     F+     H +   Y T W     
Sbjct: 179 IDGFTALGANPTQMSWADAQPALATKAVDGQENPLSVFNAAK-LHTVEQKYLTLWGYMAD 237

Query: 244 ETQFLVNKKKWDTLPK-DIQVILETAFRVAA 273
              ++V+KK W+   + D  ++ E A + AA
Sbjct: 238 PLFYVVSKKVWEEWSEADRAIVAEAAKQTAA 268