Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., TRAP dicarboxylate transporter- DctP subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  181 bits (458), Expect = 3e-50
 Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 8/308 (2%)

Query: 46  PILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGK 105
           P LG     +A   A MS G +++++    K      + D V SG+ + G++++ YW GK
Sbjct: 14  PGLGTPIPRVADALATMSGGTLKMKVYEPGKLVPAFEILDAVSSGKINSGYTTAGYWAGK 73

Query: 106 VPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVY--APHNLLSFPGGNSDIQMGGWFK 163
           +P    FS++PFG  A E  AW YYG GM L +++Y  A +N+   P      +  GWF 
Sbjct: 74  IPAAPLFSAVPFGPEAGEYMAWLYYGNGMDLYQEMYDQAGYNVHVLPCAILAPETSGWFA 133

Query: 164 KEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDL 223
           KEI S +DL GLKMR  G  G+V+ KLG   + +  GE++ +LE+G IDA E+  PA D 
Sbjct: 134 KEITSAEDLNGLKMRFFGLGGKVMQKLGVATSLLPGGEIFPALEKGAIDATEFSMPAIDA 193

Query: 224 RMGFHKIAPY-YYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAID 282
           R+GFHK+  + Y+  WH+  +  + ++NK  W+   +  + I+E+A + +  D +    +
Sbjct: 194 RLGFHKLVKFNYFPGWHQQATVFELMINKDVWNDASEQHKAIIESACKASMADSF---AE 250

Query: 283 ANATSWAAM--KSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYL 340
             A   AA+    E   ++++ + P +L   R   +E+  E+AA+D    +++     + 
Sbjct: 251 GEAIQHAALIDNVEKNGVEMKQWSPEMLELFRATWDEVAAEEAANDEFFAKVLADMTTFR 310

Query: 341 TKVRDWTR 348
                W R
Sbjct: 311 DGYALWKR 318