Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., TRAP dicarboxylate transporter- DctP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  299 bits (766), Expect = 7e-86
 Identities = 146/324 (45%), Positives = 207/324 (63%), Gaps = 2/324 (0%)

Query: 32  VYKLTLAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQ 91
           V +  LA +W  N   LG AP+  AKL  EMS+GR+QI +  A +      VFD V  G+
Sbjct: 42  VIEWRLATSWPKNFAGLGMAPERFAKLVNEMSHGRLQIHVYGAGELMPAFAVFDGVSQGK 101

Query: 92  YDLGHSSSYYWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPG 151
             + H++SYYWKGK P + FFSS+PFGM A E   W +YGGGM L E+VY P  ++   G
Sbjct: 102 IQMAHAASYYWKGKAPASQFFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLAG 161

Query: 152 GNSDIQMGGWFKKEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSLERGTI 211
           GN+ +QMGGWF K INS+ D +GLK+R+PG  GEVL ++GA P N+A  ELY +L+ G+I
Sbjct: 162 GNTGMQMGGWFNKPINSIADFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSI 221

Query: 212 DALEWVGPAFDLRMGFHKIAP-YYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFR 270
           DA EWVGP  DL  G HK+A  YYY  WHEPGS  +FL+NK  +++LP+D+Q I++TA R
Sbjct: 222 DAAEWVGPVNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAAR 281

Query: 271 VAAFDMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAK 330
               DM ++    N T+   +  +   + ++ FPP VL  L + + ++++EQA  DP+ +
Sbjct: 282 AINQDMLDEYTTRNVTALDTLVKD-EGVVLKAFPPQVLTELERISQQVIEEQAEQDPMMR 340

Query: 331 EIIDSQQAYLTKVRDWTRISTQAY 354
           ++  +  AY    R++ +IS  AY
Sbjct: 341 KVYRAYHAYEQGGREYHKISEDAY 364