Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  150 bits (380), Expect = 2e-41
 Identities = 80/259 (30%), Positives = 143/259 (55%), Gaps = 2/259 (0%)

Query: 27  SDLLIQYGVNVISAILILFIGNLVVKGVAGSVANVLKKKEMDKAVVDFIHGLVRYTLFII 86
           ++ L++Y   ++ A+LI  +G  V   ++  VA   +K E+D  + +F+  LVR  + ++
Sbjct: 21  TEFLVKYSFQLVGALLIFLLGLWVANKISNLVAKQFEKHEIDITLSNFVSNLVRILIIVM 80

Query: 87  VLIAALSRIGVQTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFKSGDYVEIGG 146
           V + AL ++G+    +VA IGAA L  GLALQG LSN+AAGV I+  RPF  G+ +EI G
Sbjct: 81  VGVIALGKLGISITPMVAAIGAASLGAGLALQGMLSNYAAGVTIIVTRPFVVGNTIEIQG 140

Query: 147 VAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHETRRVDMVIGVSYKSDLQK 206
           V+G V SI +  T+L + + +++ +PN  ++G  + N      + V++   +SY SD  +
Sbjct: 141 VSGVVKSIHLGLTLLTNEEGEVISIPNKHIVGEILHN--SFSDKLVEIRFNISYASDANQ 198

Query: 207 TKRVLRETLEKDPRILKDPDMTIGVLTLADSSINFVVRPWCKTSDYWAVYFDSMQAIKEA 266
              + ++ L+ +  + ++    IG+       +   +R W  T+ Y+   +     +  A
Sbjct: 199 VLAIAQQVLDANEEVNQERAPQIGINGFNSIGLEIGLRYWVPTNRYYQNKYQVNLELINA 258

Query: 267 LDANGIEIPFPQMDVHLNK 285
           L   GIEIP P  ++H+ +
Sbjct: 259 LRQAGIEIPCPVREIHIER 277