Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (249), Expect = 4e-26
 Identities = 69/268 (25%), Positives = 134/268 (50%), Gaps = 10/268 (3%)

Query: 27  SDLLIQYGVNVISAILILFIGNLVVKG--VAGSVANVLKKKEMDKAVV-DFIHGLVRYTL 83
           S +L  YG + I+   +L +  L++    +   +  ++++  + + V  D +H   R  L
Sbjct: 11  SFVLFTYGDSAITVSQVLQVPLLLLLAWFIVTRIGKLIRRALLARKVAPDAVHLFSRIYL 70

Query: 84  FI---IVLIAALSRIGVQTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFKSGD 140
            +   I+L+ +L  + +   +   V GA  + VG   Q  ++NF +G +++  RP + GD
Sbjct: 71  ILAIAIILVTSLEILNIPIKAFAFVSGAVAIGVGFGAQNIINNFISGWILMWERPIRIGD 130

Query: 141 YVEIGGVAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHET-RRVDMVIGVS 199
           ++EIG   G V+SI    T+++  D   ++VPNS ++   +TN++  +   R  + +GV+
Sbjct: 131 FLEIGETKGVVESINTRSTLIRRNDGVHMLVPNSQLLENTVTNWTLIDNIARSTVRVGVA 190

Query: 200 YKSDLQKTKRVLRETLEKDPRILKDPDMTIGVLTLADSSINFVVRPWC---KTSDYWAVY 256
           Y SD+++   ++++TL++   IL  P          D+++ F    W      +D   + 
Sbjct: 191 YGSDVERVADIIKQTLDEHEEILTTPSPVAIFEDFGDNALIFDGIFWVCANTEADIRRIR 250

Query: 257 FDSMQAIKEALDANGIEIPFPQMDVHLN 284
            D    I +     GI I FPQ D+HL+
Sbjct: 251 SDIRFRIYKLFTQAGIVIAFPQRDLHLD 278