Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  290 bits (741), Expect = 3e-83
 Identities = 139/267 (52%), Positives = 195/267 (73%)

Query: 19  VNTWLTNNSDLLIQYGVNVISAILILFIGNLVVKGVAGSVANVLKKKEMDKAVVDFIHGL 78
           ++ ++    +L++ YG+ V+ AI+I  IG  +          ++ K+++DK VV F+  +
Sbjct: 4   LDKYIEQAPELILTYGLQVVFAIIIFIIGKYLANVAKKLTTKLMNKRKIDKTVVSFVANM 63

Query: 79  VRYTLFIIVLIAALSRIGVQTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFKS 138
               +F+  +IA L +IGVQTAS+VAVIGAAGLAVGLALQGSLSNFA+GVL+V FRP + 
Sbjct: 64  AWALVFVFTVIATLGQIGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRPCRV 123

Query: 139 GDYVEIGGVAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHETRRVDMVIGV 198
           GDY+E  G+AG+VD I IF T L++PDNK++V PNS+++ G ITNYS  ETRR+D+VIGV
Sbjct: 124 GDYIEAAGIAGTVDEITIFSTKLRTPDNKVIVAPNSSIMNGTITNYSAMETRRIDLVIGV 183

Query: 199 SYKSDLQKTKRVLRETLEKDPRILKDPDMTIGVLTLADSSINFVVRPWCKTSDYWAVYFD 258
           SY +DL++TK VL++ L+ +  ILKDP  T+ +  LADSS+NFVVRPW K SDYW   F+
Sbjct: 184 SYDADLKQTKEVLKQVLDNNAYILKDPAYTVALTELADSSVNFVVRPWVKGSDYWPARFE 243

Query: 259 SMQAIKEALDANGIEIPFPQMDVHLNK 285
            ++ IK ALD N I IP+PQMD+++ +
Sbjct: 244 ILEQIKLALDENNIGIPYPQMDIYVKE 270