Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  199 bits (507), Expect = 9e-56
 Identities = 102/266 (38%), Positives = 160/266 (60%), Gaps = 6/266 (2%)

Query: 20  NTWLTNNSDLLIQYGVNVISAILILFIGNLVVKGVAGSVANVLK--KKEMDKAVVDFIHG 77
           N  L N   LL +  V     +LILF+ +L  K V   V  ++   K +  K + DF   
Sbjct: 274 NQALDNGPGLLFKLFV----FLLILFLAHLAGKAVQRIVKKMVSNSKLKFSKLLQDFFVS 329

Query: 78  LVRYTLFIIVLIAALSRIGVQTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFK 137
           L   T+F + L+ ALS++G +   ++A  G AG+ +G ALQ +LSNFA+G++I+ +RP+ 
Sbjct: 330 LSGKTVFALGLMIALSQLGFELGPLLAGFGVAGVIIGFALQDTLSNFASGMMILIYRPYD 389

Query: 138 SGDYVEIGGVAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHETRRVDMVIG 197
            GD +   GV G V  + +  T +K+ DN+ +++PN+ + G  I N +    RRVDM  G
Sbjct: 390 VGDLINAAGVTGKVSQMSLVSTTIKTLDNQRLIIPNNKIWGDTINNITVEHQRRVDMTFG 449

Query: 198 VSYKSDLQKTKRVLRETLEKDPRILKDPDMTIGVLTLADSSINFVVRPWCKTSDYWAVYF 257
           + Y  +++K ++VLR  +++ P++LK P+ T+ +  L +SS++FVVRPW K  DYW VY+
Sbjct: 450 IGYGDNIEKAEQVLRGIVDEHPKVLKQPEPTVKLHLLGESSVDFVVRPWVKPEDYWDVYW 509

Query: 258 DSMQAIKEALDANGIEIPFPQMDVHL 283
           D  +A+K   D   I IPFPQ DVH+
Sbjct: 510 DITRAVKMRFDQEDISIPFPQRDVHI 535