Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  289 bits (740), Expect = 4e-83
 Identities = 143/260 (55%), Positives = 194/260 (74%), Gaps = 2/260 (0%)

Query: 28  DLLIQYGVNVISAILILFIGNLVVKGVAGSVAN-VLKKKEMDKAVVDFIHGLVRYTLFII 86
           DL++ YG+ ++ A++I F+G     GVA  V + +L  +++D  VV F+  L    +F+ 
Sbjct: 13  DLIMTYGLKILFALVIFFVGKYFA-GVAQKVVHKLLNSRKVDPTVVSFVANLSWAVVFVF 71

Query: 87  VLIAALSRIGVQTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFKSGDYVEIGG 146
            +IA L +IGVQTAS+VAVIGAAGLAVGLALQGSLSNFA+GVL+V FRP + GDY+E  G
Sbjct: 72  TIIATLGQIGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRPCRVGDYIEAAG 131

Query: 147 VAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHETRRVDMVIGVSYKSDLQK 206
           +AG+VD I IF T L++PDNK++V PNS+++ G ITNYS  E RR+D+VI VSY +DL +
Sbjct: 132 IAGTVDEITIFSTKLRTPDNKVIVAPNSSIMNGTITNYSASENRRIDLVICVSYSADLAQ 191

Query: 207 TKRVLRETLEKDPRILKDPDMTIGVLTLADSSINFVVRPWCKTSDYWAVYFDSMQAIKEA 266
           TK+VL E L+ +  +LK+P  T+G+  LA SSINFVVRPW KT+DYW   F+ ++ IK A
Sbjct: 192 TKKVLTEILDNNQYVLKEPGYTVGLSELASSSINFVVRPWVKTADYWTARFEILEQIKNA 251

Query: 267 LDANGIEIPFPQMDVHLNKI 286
           LDA  IEIPFPQMD+H+ ++
Sbjct: 252 LDAADIEIPFPQMDIHVKQL 271