Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., MscS Mechanosensitive ion channel (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  209 bits (533), Expect = 8e-59
 Identities = 105/244 (43%), Positives = 152/244 (62%), Gaps = 2/244 (0%)

Query: 40  AILILFIGNLVVKGVAGSVANVLKKKEMDKAVVDFIHGLVRYTLFIIVLIAALSRIGVQT 99
           AI  L +   +V+G A  +    K   + K +  F+  +V +    + L+  LS +GV  
Sbjct: 209 AIFALLLVARIVRGYARRMFG--KLPNLSKLLQAFLATIVYWLTIAVGLMVVLSSLGVDI 266

Query: 100 ASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFKSGDYVEIGGVAGSVDSIQIFQT 159
             + A+ G     +  A+Q +LSN AAGV+I+  RPF  GDYV++ G+ G+V ++ I  T
Sbjct: 267 TPLFALFGGGAFILAFAMQETLSNLAAGVMIMINRPFDEGDYVDVAGLGGTVKNVSIVST 326

Query: 160 VLKSPDNKMVVVPNSAVIGGAITNYSRHETRRVDMVIGVSYKSDLQKTKRVLRETLEKDP 219
            + +PDN+++V+PNS V G  ITN +  +TRRVDMV G+ Y   +Q+ + VL E +   P
Sbjct: 327 QIVTPDNQIIVIPNSKVWGDVITNVTASDTRRVDMVFGIGYGDSIQEAQAVLEEVVSGHP 386

Query: 220 RILKDPDMTIGVLTLADSSINFVVRPWCKTSDYWAVYFDSMQAIKEALDANGIEIPFPQM 279
            +LKDP   I V  LADS++NF+VRPW KT+DYWAVY+D  +A+KEA DA  I IPFPQ 
Sbjct: 387 LVLKDPAPVIRVNELADSAVNFIVRPWTKTTDYWAVYWDLQRAVKEAFDAKDISIPFPQT 446

Query: 280 DVHL 283
           D+HL
Sbjct: 447 DMHL 450