Pairwise Alignments

Query, 287 a.a., mechanosensitive ion channel protein from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella sp. ANA-3

 Score =  150 bits (379), Expect = 3e-41
 Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 2/259 (0%)

Query: 27  SDLLIQYGVNVISAILILFIGNLVVKGVAGSVANVLKKKEMDKAVVDFIHGLVRYTLFII 86
           ++ L+ Y   ++ A L+  +G  V   V+  VA   +K ++D  + +F+  LVR  + ++
Sbjct: 21  TEFLVNYSFQLLGAALVFLLGLWVASKVSRLVAKQCEKHQIDITLSNFVSNLVRILIIVM 80

Query: 87  VLIAALSRIGVQTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFKSGDYVEIGG 146
           V I AL +IG+    +VA IGAA L  GLALQG LSN+AAGV I+  RPF  G+ +EI G
Sbjct: 81  VAIIALGKIGISVTPMVAAIGAASLGAGLALQGMLSNYAAGVTIIVTRPFVVGNTIEIKG 140

Query: 147 VAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHETRRVDMVIGVSYKSDLQK 206
            +G V  I +  T+L + + + + +PN  ++G  + N      + V+    +SY +D + 
Sbjct: 141 ESGVVTRINLGMTILTNEEGEQISIPNKHIVGEILHN--SFSNKLVETQFNLSYNNDPEA 198

Query: 207 TKRVLRETLEKDPRILKDPDMTIGVLTLADSSINFVVRPWCKTSDYWAVYFDSMQAIKEA 266
              ++ E L ++P + +D    IG+       I   VR W  T  Y+   +    AI  A
Sbjct: 199 AISLITELLSQNPNVSQDTTPNIGINGFNAIGIEIGVRYWVPTQSYFQHKYKINLAIYNA 258

Query: 267 LDANGIEIPFPQMDVHLNK 285
           L   GIE+  P  ++HL +
Sbjct: 259 LKQAGIEMACPVREIHLQE 277